rs29663998 SNP Detail

Summary

• ID
  rs29663998
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:9866181 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ATCAAACATA ATGGCTTTAC
  TTCTGATGTC TACTTTGTAA CAAAATGTGC TAAGTGTTGC CAAGTTTCTC AATCAGAATA
  GCTTATTAAT CATGGCCACC ATAGTAAATT CCTTCTGTAA CGTTCTTCTA TTTCCTTTGT
  GTTAACCCCT TTAGACCGAG TTAATAAAAC CCAGGAAAGT CTTTCCACTT CGGGTCCCCT
  M
  AGAAGAGAGA CCAGCAAGAG TCGGTCGGGT GGGAGGCTCT GAGTTATAGA ACTAAAATGG
  CTCATTAGAA AATCAGACAC TGAGGAAACA TTTCCTCTTA CACGAACCAA ATCATGTAAG
  ACACGAACTA TAATCAGCCA CAAGCCTTCT GTTGAAACCC CAGAGAAACC ACTAGGAAAT
  CTTTAGCAAG AAATGTTACA                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss49556414	NES12897068	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	A	A	A	A	A	A	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs29663998					SNP	A	A	A	A	A	A	A	A	A	A	A	A	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss49556414	NES12897068	PERLEGEN	MM_PANEL	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:9866181 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Pag1	phosphoprotein associated with glycosphingolipid microdomains 1			Intron
				mRNA-UTR
Rr573506	regulatory region 573506			1006 bp distal
Rr573507	regulatory region 573507			581 bp proximal
Tssr815	transcription start site region 815			642 bp downstream
Tssr28350	transcription start site region 28350			766 bp upstream
Tssr32587	transcription start site region 32587			1745 bp upstream
Tssr32588	transcription start site region 32588			473 bp downstream