rs29663228 SNP Detail

Summary

• ID
  rs29663228
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:8930906 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CACTAAAGTA AAACATAGTT
  GAATATTTTC TTTTCTTTTC CATCGTGAAA CTGGTTCTTT CCCATAGGAC GTAGAGGATG
  TGATGCTTAA AGGCAGCTGT TTTGAAATTT TTTGCTTCAG ACCATCTTGC ACTAGGGAAG
  ACACAGTGGG TTAAAGCAAA CAAACGAACA CCACCGAGTT CCCAGAGCAG CATGGTGCCC
  Y
  GGTCATCTAG GATAGAAATG TAACAGTTAG CTTTATTTTC TACTACTTTA ACTCAACCAA
  GATTACTCAG GCTGGAGCCA TGCTAAGGCA CCATGTTATC AATGGAAACA CGCAAACATC
  TGTGGCTAAG GCGTGTCTAC CTTATTCATC TTTTACTCAT CCTGATCCAT TATCTATTTT
  CAGTTAAAAA TCATTAAAAT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ	SM/J	WSB/EiJ
ss49554654	NES12910120	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	C		T	C	T		C
ss320648910	CHEV_3_8865846	CHEVERUD	SCREENING_POP	f	SNP									C				T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ	SM/J	WSB/EiJ
rs29663228					SNP	C	C	C	C	C	C	C	C	C	T	C	T	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss49554654	NES12910120	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:8930906 () rs orientation: forward

Symbol	Name	Function Class
Mrps28	mitochondrial ribosomal protein S28	Intron
Rr406711	regulatory region 406711	within coordinates
Rr407269	regulatory region 407269	251 bp proximal
Rr573331	regulatory region 573331	916 bp distal
Rr573332	regulatory region 573332	within coordinates