rs29660795 SNP Detail

Summary

• ID
  rs29660795
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:7491915 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TATTTATTGT ATGAGTTCAT
  ATACACATGA ATGTCAGAGG ATGGCTTGTA AAATAGTTTC TCTCCCTCCA CCACATGGAA
  CTCAGGAATG CACCTCAGGT GAGAGAGCTG GCTTGCTGAC AACTGCCCTG AAACAGTGAA
  CCATCTTTCT GACCCCTGAT TTTTGAAAGC TAAATGTTTA TCAGAAATAC ATACAGGGAA
  W
  CACGTTAGTT TAATGGGAAG GTATCCATTT TAAAAGTATC TGTAGTCCTT AAAATAATAC
  AGAGCTGGGG AAGGAAATAA GACAATCATT TAGAAAGATT CACGTAAGGA AGATCATTGC
  TAATCTTGGA CTCTCAAAGC TGTTATGTGT TTGAAGTGGG TAAACCTAGG CTTCCGTTCT
  TATGTCAGTG TTTCTACTGA                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss45493136	mCV24806637	ABI	CRAMUS_MOUSE	f	SNP		A	T					A		A
ss49553641	NES12894483	PERLEGEN	MM_PANEL2	f	SNP	A		T	T	T	A	T		A	A	A	A	A	A	A	A	A
ss134556566	ENSMUSSNP3130532	ENSEMBL	ENSEMBL_Sanger	f	SNP		A	T							A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs29660795					SNP	A	A	T	T	T	A	T	A	A	A	A	A	A	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss49553641	NES12894483	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:7491915 () rs orientation: forward

Symbol	Name	Function Class
Gm66025	predicted gene, 66025	within coordinates
Pkia	protein kinase inhibitor, alpha	Intron
Rr573241	regulatory region 573241	1795 bp distal
Rr573242	regulatory region 573242	1986 bp proximal