rs29660782 SNP Detail

Summary

• ID
  rs29660782
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:7323800 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTTAGTCATA ACTTAAGTCT
  ATTAGGAGAG TACTAAGATG GATGAATGAA CTCTTTTAGC AAAATATGGG ACAATTTTAT
  TATTATTTGA CTTATATTTA GAGCATGTCC CCAAAGTATA ATCTTTCCTA GAGATGTAGC
  CACATCTATT GCTACAATCT ACCAATATTC AGAGGTTCTC ACCATGTTAG CAACAAACTC
  R
  GCAACAACAG AGTTTGAATG TTGATAGATT TGGACATTTT TAGGGCTTGA CTGGGATTCA
  GTGTTGTTAA AGATTCATGG CAGCAGAAAG AAGGTAATGA GGAGAAGCTG CTATCCTGAG
  GATACACAAG TGGGCCAAGA AGGTATATAA TGTGGCAGTG GTGGCCACAC CTCTCTTAGA
  AACCAACACA GCACTCATCC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	MOLF/EiJ	NZW/LacJ	PWD/PhJ
ss49554338	NES12900003	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	G	A	G	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	MOLF/EiJ	NZW/LacJ	PWD/PhJ
rs29660782					SNP	G	G	G	G	G	G	G	A	G	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss49554338	NES12900003	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:7323800 () rs orientation: forward

Symbol	Name	Function Class
Rr573229	regulatory region 573229	711 bp distal