rs29660778 SNP Detail

Summary

• ID
  rs29660778
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:7325033 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GAGTTTCCAA TGTATATTCC
  AGCTACCAGC AACATACCTG CTGTCATGCT CACAATGGTA ATGGATTTTG GAAATGCAAG
  CCTCAAATAA TCCCTTCCTC GTATAATTGG CCTAAATGGT ATGTTATTAC AGTAAAGGAA
  AGGAACTAAT TCAGTTGTCA TTTTACATTT TTTATTGCCT TTTTTTTTCA TTTTTGAAAT
  K
  TAAAGGAGCA GTGACATTTT CACTTTTCCA AGCAAACCAA AGATTGAGGA TAACACTGTA
  GCAAAGCATC CAATATTTTA TTATCTTTTA CTAATTAATT ATTATTTTTA ACATCCAATA
  TTTATTGAGT AATTAGTCTG TGTTCAGTTC TTTGCTATAA ATTGTGTTCT CAATTTATAG
  ATGGAGCAAG TATAATTCAG                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	MOLF/EiJ	NZW/LacJ	PWD/PhJ
ss49554334	NES12899909	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	G	T	G	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	MOLF/EiJ	NZW/LacJ	PWD/PhJ
rs29660778					SNP	G	G	G	G	G	G	G	T	G	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss49554334	NES12899909	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:7325033 () rs orientation: forward

Symbol	Name	Function Class
Rr573229	regulatory region 573229	1944 bp distal