rs29659788 SNP Detail

Summary

• ID
  rs29659788
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:7492622 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCTCCATCAA TAATACATTC
  TTGCTCTTGT CATTTCTCCC TTTACCTGAC TGAGGTGTGC TCATATGTGT TGAGCCTATA
  AGCCATGTAT ATTCATTTTC AACATTAGTT CAAAATATTT GATAAAACAT AAGAATCTAA
  AAATAAAAAG AACTTAATTC AGACTGCTAT GAATTGACCA GAGCTTCCTG TTGCTGAGGC
  Y
  ATTGTTGAAA TCTTGTTGTA AGTGGGAGCA CACTAAAGAA GGTATTCATG GATAACTGTT
  CATGTGTTGC TAGAGAAAAG AGAATTTAAG AAATTAATGT AAGAGGACCT GATATTCCCC
  CTCTAAGGTA TCTATCAAGA TTACCTGTAA AAATGAGATA AGAAGATCTA AATATGGTTT
  AAGAAACAAA AGAAAAACTA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
ss49553634	NES12894445	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	C	T	T	T	C	T	T	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
rs29659788					SNP	T	T	T	T	T	T	C	T	T	T	C	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss49553634	NES12894445	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:7492622 () rs orientation: forward

Symbol	Name	Function Class
Gm66025	predicted gene, 66025	within coordinates
Pkia	protein kinase inhibitor, alpha	Intron
Rr573242	regulatory region 573242	1279 bp proximal
Rr573243	regulatory region 573243	1507 bp proximal
Tssr28298	transcription start site region 28298	1486 bp upstream