rs29659025 SNP Detail

Summary

• ID
  rs29659025
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:7493871 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TATTTGGCCA GTTCTTTCAT
  TTTTTCACAT GGTAAATGTT AGCAGATTTG TTTCACATAA ATGAAAGCTC ATTGAAGTTC
  TTGACCACTG TTCTTAGTGC AGGGAAATCT TAGACAGAAA ACACCAATGT GTACTGAGTA
  CTGAACACAC TGGGAATTGC ACAGGATTTC ATTATTTTAA CATTTGAGAA TTTTTGTCAC
  Y
  GAATTTGAGA GTGGAACAAG GTAATTTTTT CTGTTTCTGA CATTTAGACT TCATTTTTAA
  AATTGGATTG TTCACTCTAG AATCCTCTGT GCGTTGGAGG CAGTCTCTCT ATCCTCCCTT
  CCAAGTGTGC GACTCCCATT TCATGTGTCC CATTTACAGA AGTAAAATTA GCATGTTCTT
  CAGTCACCAT TTGGCTCATG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss49553621	NES12894341	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	T	T	T	T	C	T	T	C	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs29659025					SNP	T	T	T	T	T	T	T	T	T	T	C	T	T	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss49553621	NES12894341	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:7493871 () rs orientation: forward

Symbol	Name	Function Class
Gm66025	predicted gene, 66025	within coordinates
Pkia	protein kinase inhibitor, alpha	Intron
Rr573242	regulatory region 573242	30 bp proximal
Rr573243	regulatory region 573243	258 bp proximal
Tssr28298	transcription start site region 28298	237 bp upstream