rs29656238 SNP Detail

Summary

• ID
  rs29656238
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:108695925 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CATAGTAAGC TTCAGGCTAG
  CCTGGACTCT ATCTATAATG AGACTTGCTG AAAACAGCAA TGCGAGGGTG GGGGTGTCAT
  TTATTTTCCC AAGCTCCTAT ATTGGGCTTC AACAGAGCAA ACCAGAACAA AGCCACTCAT
  GCCAGGGGCT AAGCACTCAC CTGGGTATAA AACTGGGCCA CTTAGTTAAT TTTTAAACCA
  R
  GAGATTCAGT CACCACTCAG ACAAGGGCTA GCCAATCTGC GGTAGCATGC TAAAGAAATC
  TCTGCTTTGC CCTACACCAG GGGCAGGACT GAAAGCACCA ACTGGCTTTT TTGGCCCTGG
  CTTTCTTTCT GTCCGTAGGC TCTCTTGATG CACTCTATGC TTTTAATGCT CCCCAATTCA
  CGACTGCACC AAAAGCCAAT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss46868818	NES10712368	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	G	G	G	G	A	G	A	A	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs29656238					SNP	G	G	G	G	G	G	G	G	G	G	A	G	A	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46868818	NES10712368	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:108695925 () rs orientation: forward

Symbol	Name	Function Class
Rr583314	regulatory region 583314	314 bp distal
Rr583315	regulatory region 583315	610 bp proximal