rs29653679 SNP Detail

Summary

• ID
  rs29653679
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:108702358 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ATAAGCACAC CGCATCTCAG
  AGTACGTAAT TCCTCCAATT ACAAAAATAA TCAGCCTTGA CCCATTTTTC CGGTCCAGCT
  CTAAGTAGTT AGTTCTGGGT TTCTGGCGAG CACTAGAAAG TAAAACACAA AGCAAACATG
  CTGTCAGCAC TCCCAAAGCC ACGCGGCGTG CATCTCAAAC TCACCTTTGG AAGCAATAAC
  R
  AAGCAATCTA ACCGTGGTGC TTTCCCTACA GTAATTTAGG CAAAGGCTGC ACACCCCCCC
  CCCCTTTCAG ATTTCAATTT GAATAGATCA CATAGTTTTA TTTGTGGTGA GACAGTAGGA
  AAAAGATCAA GGCTAGATCT AGGAGACATA TATAAAACCT TATTTCCAAA AAGTATAGTA
  AAAACCACAC AGTCTAGGCT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss46868887	NES10711973	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	G	G	G	G	G	A	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs29653679					SNP	G	G	G	G	G	G	G	G	G	G	G	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46868887	NES10711973	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:108702358 () rs orientation: forward

Symbol	Name	Function Class
Gm66359	predicted gene, 66359	899 bp upstream
Rr583317	regulatory region 583317	627 bp proximal
Rr583318	regulatory region 583318	910 bp proximal
Stxbp3	syntaxin binding protein 3	Intron