AGAATTTCAC AAGTGGCTCG TGGCCGAGAT TTGGTACTGC AGGAGCACAA GAAGAACTAC AACAACAGAA GCATTTCATT TGCCATCACT GTGTATCTTT GCATAAGTAT TTTTTGCACA AGTTAGGTTA GATCTACATC AAATGAAAAG AGTGGATGTA TTTTAGTCAA ACTGTGTTAG GAACTTCTGG CCTATAATAG S AGCCAAACAT GGGATGTGTG TGCAACCTCC AAACTGGGAA ACACTTAAGA GGTGTTTCCT TGAGCTCCTG GCTTGCTTGG CTAGGGCAAA TATGACGAGG AGCCTACCAG GTGCTCTGCT CAGAGCTGCA ATGGGGAAAA CCCCATCCAA ACGACAGCAG AGCACACTCA GCTAGTAACA GCTAGCTCTC ATTAGCCCCT S = C/G Note: Sequence in lower case indicates low-complexity or repetitive sequence |
Assay ID | Submitter SNP ID |
Submitter Handle |
Population | ss orientation |
Variation Type | 129S1/SvImJ |
A/J |
AKR/J |
BALB/cByJ |
BTBR T<+> Itpr3 |
FVB/NJ |
MOLF/EiJ |
NZW/LacJ |
WSB/EiJ |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
ss46869039 | NES10812698 | PERLEGEN | MM_PANEL2 | f | SNP | C | C | C | C | C | C | G | C | C |
SNP Consensus Information | ||||||||||||||
SNP | Consensus Type | 129S1/SvImJ |
A/J |
AKR/J |
BALB/cByJ |
BTBR T<+> Itpr3 |
FVB/NJ |
MOLF/EiJ |
NZW/LacJ |
WSB/EiJ |
||||
rs29649811 | SNP | C | C | C | C | C | C | G | C | C |
Assay ID | Submitter SNP ID |
Submitter Handle |
Population | ss orientation |
Variation Type |
Alleles |
---|---|---|---|---|---|---|
ss46869039 | NES10812698 | PERLEGEN | MM_PANEL | f | SNP | C/G |
Location: Chr3:28474927 () rs orientation: forward | ||||||||
Symbol | Name | Transcript | Protein | Function Class |
Allele | Residue | Codon Position |
AA Position |
---|---|---|---|---|---|---|---|---|
Mir466q | microRNA 466q | 760 bp downstream | ||||||
Rr574579 | regulatory region 574579 | 119 bp distal | ||||||
Rr574580 | regulatory region 574580 | 1326 bp proximal | ||||||
Rr574581 | regulatory region 574581 | 1597 bp proximal | ||||||
Tnik | TRAF2 and NCK interacting kinase | Intron | ||||||
Noncoding-Transcript-Variant |
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO) |
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last database update 03/25/2025 MGI 6.24 |
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