rs29649344 SNP Detail

Summary

• ID
  rs29649344
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:28422397 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTTCAGATTG TGACAGTTCA
  AAATGCTTTC ATTTCACCTT ATAACAAATG TAGGAATTGT AAGATAAGTT AGCATGTAAC
  ACCCTCACAG TGTTTGGATC TTAGAATGTC TTCGTGATTA TAAGGTATTG CCAAGTAATT
  AAACATCACT AGTTACTACT ACACAATGAC CTTTATTTTT CAGTTGTTGT TTATAAATGG
  Y
  GAACTGAAAC TCCATCAGGA TTATGGAATT ATCGGAATTT AGAGCTGTTC AGTTTTGAAT
  GACTTGTGTA TAGAAAACAT TTCAGGCTCC TTACAGAGAA CAACCAATTT CCTGAGCACT
  AAGATAGAAT TTGTTATCTC TGTAATAAGT TTAACCTGAA ACGTATCTTT ATAAAAATCC
  ACTTGGATAT TTTGGATGCG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss45467000	mCV22687625	ABI	CRAMUS_MOUSE	f	SNP		C					T
ss46867872	NES10816451	PERLEGEN	MM_PANEL2	f	SNP	T	C	T	T	T	C		C	T	T	T	C	T	T	C	C
ss134712852	ENSMUSSNP109387	ENSEMBL	ENSEMBL_Sanger	f	SNP		C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs29649344					SNP	T	C	T	T	T	C	T	C	T	T	T	C	T	T	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46867872	NES10816451	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:28422397 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Rr574568	regulatory region 574568			1137 bp proximal
Rr574569	regulatory region 574569			1501 bp proximal
Tnik	TRAF2 and NCK interacting kinase			Intron
				Noncoding-Transcript-Variant