rs29649285 SNP Detail

Summary

• ID
  rs29649285
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:108696192 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTGCCCTACA CCAGGGGCAG
  GACTGAAAGC ACCAACTGGC TTTTTTGGCC CTGGCTTTCT TTCTGTCCGT AGGCTCTCTT
  GATGCACTCT ATGCTTTTAA TGCTCCCCAA TTCACGACTG CACCAAAAGC CAATCAGATC
  ATCCAACTCA ATGTACTGGA AGAATATTCT GATGAAATGT TTTGTGTTAG TTACGTTGTG
  Y
  GGTGCTATGA CCTGACACTG ATAACGTAGA TATACATCTA TGTTGTGGTA GAAACAACTC
  AAGGGAGGGA AGGTGTATTT TGGCTCATTG GTTTTGGAGG CTTTCAGAGC ATCCCAGCTG
  GTGTGGCAGA TCAGCTCATG ATGGCAGAGT GTGGCAGAGA CTGTTCTCAT CATGGTGGCC
  CAGGAAGCAG AGAGCACGGC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss46868833	NES10712373	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs29649285					SNP	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46868833	NES10712373	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:108696192 () rs orientation: forward

Symbol	Name	Function Class
Rr583314	regulatory region 583314	581 bp distal
Rr583315	regulatory region 583315	343 bp proximal