rs29648897 SNP Detail

Summary

• ID
  rs29648897
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:28361656 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ACGTGTTGGG CACTACACAG
  TCTATTGTTT CAGTTTTCTG CAAACCACGA GACTGCAAAC ATCTCCAGAC TTCTCAGCTT
  GGGGAACTAG AGAAGAAGAG CCTGGTCCAG ACCAATACAG CTAATGAGCA AACCCAGGGC
  TTCCTTCTAT AGGTCAAAGG TCTTTGTACT CTCATCCTCT GGCAGCCATC TTATGCATCA
  W
  CCATTTATTC TTTTAAAAAC TTTATTCAGA CAACATGAAA CTTACCTATG TGGGTGATGC
  AGTTTACTGG GTCTTTACAG AGATGTCCCA CTGACATCAA ATCAAACTTG GAATGTTTCT
  CATCACACCC CCAAACTCTA AGCCCAGTAC TAGTGGTCAC CGTGTCCTCT GTTCCCTCAC
  ACTCCATCCC CAAGCATCTA                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss46866915	NES10820230	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	T	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs29648897					SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	T	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46866915	NES10820230	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:28361656 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Rr574560	regulatory region 574560			272 bp distal
Tnik	TRAF2 and NCK interacting kinase			Intron
				Noncoding-Transcript-Variant