rs29648812 SNP Detail

Summary

• ID
  rs29648812
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr6:29923300 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CAGCCTTTAT CTTAGTTGGC
  TGGATTATAA GTAAATTTCA ATTGCTTTAT GGTATAGGTG GAATCAATTT TGAGATGCTA
  ATCTGTTTGA TTTTAATTTA TCTTCTGTAA AATGAGGGTG CAAAGTGATG TTCTGGTTGC
  TGCAGGAGCA GGGGACATTG TTATCCTGTT TTATATTCAG AGGTTATGAT CAGTAGTTAG
  Y
  TTTTCCTGAA CACAAAAGCC TTTGACAACC CTAGGTACTT TCCACGTGAT TTGCCACATC
  ATCTGCCCAG GTGGCCATAT GTAGGAACCT ATATTTCTGT ACCCTTCAAG GAAAGTGAAC
  TGGCTCCCAA CCTGTGTGTG TGTGTGTGTG TGTGTGTGTG TGTGTGTGTG TGTGTGTTTA
  GTCCTTATCT TGGCTTCCTA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss47865272	NES11671046	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	T	T	T	T	C	T	T	C	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs29648812					SNP	T	T	T	T	T	T	T	T	T	T	C	T	T	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47865272	NES11671046	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:29923300 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Rr627673	regulatory region 627673			62 bp proximal
Strip2	striatin interacting protein 2			Intron
				Noncoding-Transcript-Variant