rs29648789 SNP Detail

Summary

• ID
  rs29648789
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:28400492 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ATCTGCTGCA GCTGCTATCT
  TTTTCCTTCA TCTAAGCATC TCTGCAAAGG CAACATGCCA AAGTCTTTGT GAGTCTGGTT
  CCCATCATTT GGACCTTGTG TTGCTGGAAA TACAGGAAAG GTGCACTGTC CTGACAGGTC
  TTGAGGAATC CAATGTTTGC ATATCTCTGT GAGCCTTGTG GTGCATTTCT CCATGAATTT
  M
  TATCACATTT CTGCTGATGG AAAGACTTAA ATGAGGGCCT TTGTGTGAAA ATCAATCTTT
  TAAGCAACAT GTGTTTGTGG CCTTCATTGG CCTGCGGGAG AGTCGAGGAT ACCTATTCTT
  GTCCAAAATT TGCCAAATAG TCATTCGTGA TGTTTTTTTT TTGATGCACT TTCTGGAATC
  AGCCTGCCAA TTCCTGGCTC                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
ss45560812	mCV22687577	ABI	CRAMUS_MOUSE	f	SNP	A	A	C				A		A
ss46867407	NES10818091	PERLEGEN	MM_PANEL2	f	SNP	A		C	A	A	C		C		A	A	A	A	A
ss134712478	ENSMUSSNP5001133	ENSEMBL	ENSEMBL_Sanger	f	SNP		A	C						A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
rs29648789					SNP	A	A	C	A	A	C	A	C	A	A	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46867407	NES10818091	PERLEGEN	MM_PANEL	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:28400492 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Rr574565	regulatory region 574565			5 bp distal
Tnik	TRAF2 and NCK interacting kinase			Intron
				Noncoding-Transcript-Variant