rs29648003 SNP Detail

Summary

• ID
  rs29648003
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:28399697 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CAAGGTCATG CAGCTATAGC
  TTTTGATTTG TATAACTTTG CCTCTAGAGC CTCATCGGAT AGTACAAAGG TCTCTGATCC
  AAACATTATC TGTCTTTCAA GACCAACAAA CCACCCTCTA GCTTAGCCAT AGGCACAAAA
  ACCTTGGGTT GGGGGATCAT ATACAAATGA GGCTCTGCAG TCAGTCAACA GTCTGTCTGA
  R
  TTGATAACTA GCCATATGTA CCATTAATAG TGACATGAAG TGATGGACTG GGATTGGCTT
  GTGTCTTTGT ATGCCAGATG ACAGGCCCTG CCCCCTGGTA TCTGTTGACA TGCTTTTGGC
  TGTTCCTCCA TGGCCCTGGG CCATCCCAAC TCTCTCAGGA TGTGAGAGAA TCGGAGAAAA
  TCCAAGCAAT TACTATTTGC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
ss46867401	NES10818082	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	A	G	A	A	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
rs29648003					SNP	A	A	A	A	A	A	A	G	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46867401	NES10818082	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:28399697 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Rr574564	regulatory region 574564			1542 bp distal
Rr574565	regulatory region 574565			within coordinates
Tnik	TRAF2 and NCK interacting kinase			Intron
				Noncoding-Transcript-Variant