rs29648000 SNP Detail

Summary

• ID
  rs29648000
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:28399054 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        AGGAA GGGAGGAGGA AGTCTGTTCT
  Y
  GGGATGACTC TGGTTCATCT GAGAA                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
ss45396249	mCV22687571	ABI	CRAMUS_MOUSE	f	SNP		C				T
ss46867398	NES10818145	PERLEGEN	MM_PANEL2	f	SNP	T	C	T	T	C		C	T	T	T	T
ss134712469	ENSMUSSNP6179149	ENSEMBL	ENSEMBL_Sanger	f	SNP		C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
rs29648000					SNP	T	C	T	T	C	T	C	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46867398	NES10818145	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:28399054 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Rr574564	regulatory region 574564			899 bp distal
Rr574565	regulatory region 574565			552 bp proximal
Tnik	TRAF2 and NCK interacting kinase			Intron
				Noncoding-Transcript-Variant