rs29647997 SNP Detail

Summary

• ID
  rs29647997
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:28397934 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AAGAACAAAT TTAAAAGGAA
  GCCTTATTCC TTTAGTAGCA CTTTGCAAGG GGAAAATAGA ATGCAGTCTA AATGCAATCC
  TGGCTTTATT GGAGCCTGTT TTTTTTTTTT TTTTTTTTTT CCTTTGTGTG AATAACCAGC
  CTTCCAGTCA GGCTGCCACA CTTGTGCAGA GATTTTTAAC TGTTCATGCC AGCAGTCAGA
  R
  AATGTTGCCA ATTAGTCATT CTTAGCTTCT AGATTACCTT GAGAGTGGCT TAAAATGCAT
  GTTTGGAGTT CAAAGGACTT CCAATGAAGT CAGAAGATTT GTAGTTCTCT TGGTTTCTAT
  CGGGTGCAGA GACTACAAAT CCCAGCATGC TCTGTTTCAG GCCTTATCAG AAGTGGTCAG
  CCTTGCAAAA GCAGGTATCA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
ss46867395	NES10818224	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	G	A	G	G	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
rs29647997					SNP	G	G	G	G	G	G	G	A	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46867395	NES10818224	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:28397934 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Rr574564	regulatory region 574564			within coordinates
Rr574565	regulatory region 574565			1672 bp proximal
Tnik	TRAF2 and NCK interacting kinase			Intron
				Noncoding-Transcript-Variant