rs29646879 SNP Detail

Summary

• ID
  rs29646879
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:95289604 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        CTTAGGGGCT GGAGATGCGA CCCGGTTCAA GGAGGCGCTG
  CTAGGGCCTC CAGCCGTTAG TAGCAGAACA GAGCTCTAGG TGCGCCCGGG GCGCGGCGCC
  R
  GCGCCTGATT CCCAGCTCGC CCGCACAGCC GGAGACTTGG GTTCTCTGTA GCTGCACGAC
  TCGGCTCCCA GGATTCGCTC TGGAGAAGAG TTGGTGATA                       
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	C57BL/6J	DBA/2J
ss46327366	mCV23074465	ABI	CRAMUS_MOUSE	f	SNP	A	G	A
ss136828244	ENSMUSSNP3605637	ENSEMBL	ENSEMBL_Sanger	f	SNP	A		A
SNP Consensus Information
SNP					Consensus Type	A/J	C57BL/6J	DBA/2J
rs29646879					SNP	A	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:95289604 () rs orientation: forward

Symbol	Name	Function Class
Chst2	carbohydrate sulfotransferase 2	281 bp upstream
Gm35915	predicted gene, 35915	within coordinates
Gm37805	predicted gene, 37805	within coordinates
Rr684785	regulatory region 684785	1967 bp distal
Rr684786	regulatory region 684786	1763 bp distal
Rr684787	regulatory region 684787	1589 bp distal
Rr684788	regulatory region 684788	1566 bp distal
Rr684789	regulatory region 684789	1407 bp distal
Rr684790	regulatory region 684790	186 bp distal
Rr684791	regulatory region 684791	within coordinates
Tssr86547	transcription start site region 86547	112 bp downstream
Tssr90904	transcription start site region 90904	432 bp upstream
Tssr90905	transcription start site region 90905	360 bp upstream
Tssr90906	transcription start site region 90906	339 bp upstream
Tssr90907	transcription start site region 90907	312 bp upstream
Tssr90908	transcription start site region 90908	275 bp upstream
Tssr90909	transcription start site region 90909	252 bp upstream
Tssr90910	transcription start site region 90910	218 bp upstream
Tssr90911	transcription start site region 90911	190 bp upstream
Tssr90912	transcription start site region 90912	216 bp downstream