rs29646635 SNP Detail

Summary

• ID
  rs29646635
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr6:29828772 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTTTTTGTTA TTTTTCTCCT
  TAAAATTGCT AAAGCTTATC CTCCCACACT TCAATCATAA TTTTTTGTGG AGGGTAAAAG
  AGAGCTGAGT TTTGAGTTCT TCCATGTTTG AAAATACCCA TGTTCTTTTC TTACACACTT
  CTTGCTATTC GGCCTATGTT AGGAATTTGC TAATTGACTT CTCCAGTGTT GCTTGTTAAG
  Y
  TTGGCTCCTC CAGTTTCTGT TGAGCTCCTC TGCCAACCCC TAGTGAACCC TTAACATAAC
  CCAATTAACC CTTGGTCATT GGGTTAATTT TTAATAAAAT TTAAGTGTGG CTTGGTAAGA
  ACTTTCTTAG ATGTTAGCAG GAAATTGGAT GAAAATTTCC CCTCCCATTT CTGAGATATA
  GTACAAACTA GATGATTTTT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss47864696	NES11677591	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	T	C	C	C	T	C	C	T	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs29646635					SNP	C	C	C	C	C	C	T	C	C	C	T	C	C	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47864696	NES11677591	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:29828772 () rs orientation: forward

Symbol	Name	Function Class
Ahcyl2	S-adenosylhomocysteine hydrolase-like 2	Intron
Rr627648	regulatory region 627648	1031 bp distal
Rr627649	regulatory region 627649	within coordinates