rs29645808 SNP Detail

Summary

• ID
  rs29645808
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:108470408 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCACTGTATC TTACCATACC
  AAGCTGAAAA CGTCACCACT GTCAGGATAG TTGGACCGTT CTTGGGGACA CGGCTTGTTT
  GTTTTGTTTT GTTTTGTTTG TTTGTTTTGC TTCTATGCTC TGCAGCAGTA ATATGTGCTG
  TAATATCTGA AACCCGACGA GAGTTTGAGT GCTGAGGGGG ATACCACAGT AGTTGCTCGG
  R
  CTCCTGGGAC AGCCCTTGTT AGGTGGCTTC TTGCGGAAAT CTAGCCAAGC TGCCTCTGAC
  TTTCGTAAAC GGAATAAGAA ACTATAACAA AAGCCACATG CTTCCGATCC TAAAGCTTTC
  GGTTGTCAGA AGCATTCAGA CAGCTTCCTG TTTGTTAGAA TGACTTTCTT TTCCTTAAAT
  TACCAGGATA GTTTCCTTTA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss46866190	NES10725659	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	G	A	A	A	G	A	G	G	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs29645808					SNP	A	A	A	A	A	A	G	A	A	A	G	A	G	G	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46866190	NES10725659	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:108470408 () rs orientation: forward

Symbol	Name	Function Class
Cpgi13705	CpG island 13705	399 bp distal
Gm65656	predicted gene, 65656	760 bp downstream
Rr367532	regulatory region 367532	514 bp downstream
Rr397938	regulatory region 397938	258 bp downstream
Rr583265	regulatory region 583265	933 bp distal
Rr583266	regulatory region 583266	136 bp distal
Rr583267	regulatory region 583267	219 bp distal
Rr583268	regulatory region 583268	434 bp proximal
Tmem167b	transmembrane protein 167B	626 bp upstream
Tssr35153	transcription start site region 35153	914 bp upstream
Tssr35154	transcription start site region 35154	746 bp upstream
Tssr35155	transcription start site region 35155	675 bp upstream
Tssr35156	transcription start site region 35156	654 bp upstream