rs29645805 SNP Detail

Summary

• ID
  rs29645805
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  125
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:108470351 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        AGGATAGTTG GACCGTTCTT GGGGACACGG CTTGTTTGTT
  TTGTTTTGTT TTGTTTGTTT GTTTTGCTTC TATGCTCTGC AGCAGTAATA TGTGCTGTAA
  Y
  ATCTGAAACC CGACGAGAGT TTGAGTGCTG AGGGGGATAC CACAGTAGTT GCTCGGACTC
  CTGGGACAGC CCTTGTTAGG TGGCTTCTTG CGGAAATCTA                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss46866187	NES10725658	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	T	T	T	T	C	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs29645805					SNP	T	T	T	T	T	T	T	T	T	T	C	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46866187	NES10725658	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:108470351 () rs orientation: forward

Symbol	Name	Function Class
Cpgi13705	CpG island 13705	342 bp distal
Gm65656	predicted gene, 65656	817 bp downstream
Rr367532	regulatory region 367532	457 bp downstream
Rr397938	regulatory region 397938	201 bp downstream
Rr583265	regulatory region 583265	876 bp distal
Rr583266	regulatory region 583266	79 bp distal
Rr583267	regulatory region 583267	162 bp distal
Rr583268	regulatory region 583268	491 bp proximal
Tmem167b	transmembrane protein 167B	569 bp upstream
Tssr35153	transcription start site region 35153	857 bp upstream
Tssr35154	transcription start site region 35154	689 bp upstream
Tssr35155	transcription start site region 35155	618 bp upstream
Tssr35156	transcription start site region 35156	597 bp upstream