rs29645343 SNP Detail

Summary

• ID
  rs29645343
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:28217972 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GGAGG TGCTCCTTAG TCACCTCTCA
  R
  TGCTGCTGTC CCATCAGCAT GCATC                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss46865721	NES10830154	PERLEGEN	MM_PANEL2	f	SNP	G	A	G	G	G	A	A	A	A	A		A	A	G	A		A
ss134711395	ENSMUSSNP1812550	ENSEMBL	ENSEMBL_Sanger	f	SNP		A
ss320690441	CHEV_3_28062745	CHEVERUD	SCREENING_POP	f	SNP											A					G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs29645343					SNP	G	A	G	G	G	A	A	A	A	A	A	A	A	G	A	G	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46865721	NES10830154	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:28217972 () rs orientation: forward

Symbol	Name	Function Class
Rr574538	regulatory region 574538	1504 bp distal
Rr574539	regulatory region 574539	1438 bp distal
Rr574540	regulatory region 574540	1372 bp distal
Rr574541	regulatory region 574541	1055 bp proximal
Rr574542	regulatory region 574542	1833 bp proximal
Rr574543	regulatory region 574543	1927 bp proximal
Tssr32864	transcription start site region 32864	921 bp downstream