rs29644882 SNP Detail

Summary

• ID
  rs29644882
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:108470350 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGCTATAATG CGAAGCAATT
  GCACGTAAGG TGGCGCACGT GTGTATACTA CAGCAGGGTC ACTGTATCTT ACCATACCAA
  GCTGAAAACG TCACCACTGT CAGGATAGTT GGACCGTTCT TGGGGACACG GCTTGTTTGT
  TTTGTTTTGT TTTGTTTGTT TGTTTTGCTT CTATGCTCTG CAGCAGTAAT ATGTGCTGTA
  R
  TATCTGAAAC CCGACGAGAG TTTGAGTGCT GAGGGGGATA CCACAGTAGT TGCTCGGACT
  CCTGGGACAG CCCTTGTTAG GTGGCTTCTT GCGGAAATCT AGCCAAGCTG CCTCTGACTT
  TCGTAAACGG AATAAGAAAC TATAACAAAA GCCACATGCT TCCGATCCTA AAGCTTTCGG
  TTGTCAGAAG CATTCAGACA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss46866184	NES10725657	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	A	A	A	A	A	G	A	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs29644882					SNP	A	A	A	A	A	A	A	A	A	A	A	G	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46866184	NES10725657	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:108470350 () rs orientation: forward

Symbol	Name	Function Class
Cpgi13705	CpG island 13705	341 bp distal
Gm65656	predicted gene, 65656	818 bp downstream
Rr367532	regulatory region 367532	456 bp downstream
Rr397938	regulatory region 397938	200 bp downstream
Rr583265	regulatory region 583265	875 bp distal
Rr583266	regulatory region 583266	78 bp distal
Rr583267	regulatory region 583267	161 bp distal
Rr583268	regulatory region 583268	492 bp proximal
Tmem167b	transmembrane protein 167B	568 bp upstream
Tssr35153	transcription start site region 35153	856 bp upstream
Tssr35154	transcription start site region 35154	688 bp upstream
Tssr35155	transcription start site region 35155	617 bp upstream
Tssr35156	transcription start site region 35156	596 bp upstream