rs29644879 SNP Detail

Summary

• ID
  rs29644879
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:108470264 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GTCAC CACTGTCAGG ATAGTTGGAC
  Y
  GTTCTTGGGG ACACGGCTTG TTTGT                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss46866181	NES10725656	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	T	C	C	T	C	C	C		T	C	T	T		T
ss320866731	CHEV_3_108365866	CHEVERUD	SCREENING_POP	f	SNP											T					T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs29644879					SNP	C	C	C	T	C	C	T	C	C	C	T	T	C	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46866181	NES10725656	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:108470264 () rs orientation: forward

Symbol	Name	Function Class
Cpgi13705	CpG island 13705	255 bp distal
Gm65656	predicted gene, 65656	904 bp downstream
Rr367532	regulatory region 367532	370 bp downstream
Rr397938	regulatory region 397938	114 bp downstream
Rr583265	regulatory region 583265	789 bp distal
Rr583266	regulatory region 583266	within coordinates
Rr583267	regulatory region 583267	75 bp distal
Rr583268	regulatory region 583268	578 bp proximal
Tmem167b	transmembrane protein 167B	482 bp upstream
Tssr35153	transcription start site region 35153	770 bp upstream
Tssr35154	transcription start site region 35154	602 bp upstream
Tssr35155	transcription start site region 35155	531 bp upstream
Tssr35156	transcription start site region 35156	510 bp upstream