rs29643963 SNP Detail

Summary

• ID
  rs29643963
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:108470178 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CAGTGTGCCA GAACATGTCG
  TTCCCCGTTG TATCTACTTG AGAACAAAAC TTAGGGTTCC AGTGATTCAT GACCAAGAAA
  CAAAAGAAAG CCATCCCGTT TCCTCCAACT TATTTAGGTG ACAACTGGTA GTGAAATCAG
  GTACAGTTCC AAGAGAAAAC ACTTGGGAAC CAGGCTATAA TGCGAAGCAA TTGCACGTAA
  R
  GTGGCGCACG TGTGTATACT ACAGCAGGGT CACTGTATCT TACCATACCA AGCTGAAAAC
  GTCACCACTG TCAGGATAGT TGGACCGTTC TTGGGGACAC GGCTTGTTTG TTTTGTTTTG
  TTTTGTTTGT TTGTTTTGCT TCTATGCTCT GCAGCAGTAA TATGTGCTGT AATATCTGAA
  ACCCGACGAG AGTTTGAGTG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss46866175	NES10725654	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	A	G	G	G	G	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs29643963					SNP	G	G	G	G	G	G	A	G	G	G	G	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46866175	NES10725654	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:108470178 () rs orientation: forward

Symbol	Name	Function Class
Cpgi13705	CpG island 13705	169 bp distal
Gm65656	predicted gene, 65656	990 bp downstream
Rr367532	regulatory region 367532	284 bp downstream
Rr397938	regulatory region 397938	28 bp downstream
Rr583265	regulatory region 583265	703 bp distal
Rr583266	regulatory region 583266	within coordinates
Rr583267	regulatory region 583267	within coordinates
Rr583268	regulatory region 583268	664 bp proximal
Tmem167b	transmembrane protein 167B	396 bp upstream
Tssr35153	transcription start site region 35153	684 bp upstream
Tssr35154	transcription start site region 35154	516 bp upstream
Tssr35155	transcription start site region 35155	445 bp upstream
Tssr35156	transcription start site region 35156	424 bp upstream