rs29643960 SNP Detail

Summary

• ID
  rs29643960
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:108469973 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TAGCTGATCG TCGAGCCAAA
  GCCTCGCCCT GCCTGCGTAG CGTCTGCGTC CCTACGTAGT GGGAGGAGAG CGTGTTGGGC
  GAGGCTTCCT TTGTGGTCAT GGCAACCGGA AGTCCGCCTG CTTGCTCCTG TCTAATTAGA
  CCGACTGGAC CCAGACAGTG TGTTTGAAAA ATAAAGGCTG TAGGGATTGC TCTGTGACAC
  W
  TGTTCAGTGT GCCAGAACAT GTCGTTCCCC GTTGTATCTA CTTGAGAACA AAACTTAGGG
  TTCCAGTGAT TCATGACCAA GAAACAAAAG AAAGCCATCC CGTTTCCTCC AACTTATTTA
  GGTGACAACT GGTAGTGAAA TCAGGTACAG TTCCAAGAGA AAACACTTGG GAACCAGGCT
  ATAATGCGAA GCAATTGCAC                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ
ss46866172	NES10725653	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	T	A	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ
rs29643960					SNP	A	A	A	A	A	A	T	A	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46866172	NES10725653	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:108469973 () rs orientation: forward

Symbol	Name	Function Class
Gm65656	predicted gene, 65656	1195 bp downstream
Rr367532	regulatory region 367532	79 bp downstream
Rr397938	regulatory region 397938	within coordinates
Rr583265	regulatory region 583265	498 bp distal
Rr583266	regulatory region 583266	within coordinates
Rr583267	regulatory region 583267	195 bp proximal
Rr583268	regulatory region 583268	869 bp proximal
Tmem167b	transmembrane protein 167B	191 bp upstream
Tssr35153	transcription start site region 35153	479 bp upstream
Tssr35154	transcription start site region 35154	311 bp upstream
Tssr35155	transcription start site region 35155	240 bp upstream
Tssr35156	transcription start site region 35156	219 bp upstream