rs29643954 SNP Detail

Summary

• ID
  rs29643954
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:108469048 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGAAATACTT TCCCGAGCCT
  CTCCAATCAT AGTACCTAGA AAAGGCTTTC TTATTTCCGT TCCTGTAAGA CTGACTATAA
  AGGTCTTAAT TCATGCTCTA GAACCTGAAA ATCATGACTA TAAAATTGTT TGAAGCAATC
  TGGAAAAATT ACAAGTGCTC CATCACTAAT AAAAGGCGGC TTCTAAATCC ACCCTTTGCG
  R
  TATTAGCCAG AAGCTCCAGA TGGAGCCACC CAACTAGGAC TTTAGTCAAA CGAATGAAGG
  CTTTTTTTGG TGTCTTTTAA ATTAACAAAA TAAACAAACA AACAAAAAAC TTTGGGGGTT
  GTCTACAATC ACCTCCCCCG CAAACGGTGG GATTTGATAC CATTACTAAG TCCTTTCAAC
  CAGCTTACTG TCAGAAAGTA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
ss46866166	NES10725651	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	A	G	G	G	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
rs29643954					SNP	G	G	G	G	G	G	A	G	G	G	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46866166	NES10725651	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:108469048 () rs orientation: forward

Symbol	Name	Function Class
Cpgi13705	CpG island 13705	391 bp proximal
Rr367532	regulatory region 367532	659 bp upstream
Rr397938	regulatory region 397938	801 bp upstream
Rr583265	regulatory region 583265	within coordinates
Rr583266	regulatory region 583266	428 bp proximal
Rr583267	regulatory region 583267	1120 bp proximal
Rr583268	regulatory region 583268	1794 bp proximal
Tmem167b	transmembrane protein 167B	Intron
Tssr35153	transcription start site region 35153	421 bp downstream
Tssr35154	transcription start site region 35154	596 bp downstream
Tssr35155	transcription start site region 35155	617 bp downstream
Tssr35156	transcription start site region 35156	692 bp downstream