rs29643354 SNP Detail

Summary

• ID
  rs29643354
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:28359305 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTTAAAATAT ATGAAAACTG
  TCCTCCAAAG CCTTTGGAGA AAGTAGAATA AGTGAATTAA AAACTGGTCA TTTAATTCAT
  TCTTTGAATG CACGAATATT TTTATTTATA GTCTGGTTTA GTAATTCACA GTAGTAAATG
  TTGGTGTATA TTTGTGCATG TGTATAATAT GCATGTTAGG AATTTTACAT TCTATGTGTG
  Y
  CTTCTCCTAC TTTTAAAATC TGCATTGTCT TTAAATGAAT GTCTCTAAAG TTCACTGAAT
  TCTGTTTTCT CTAAGACTTC TGAAAAGAAT TCATTCAATG ACAGTTCACT CACATGGTCT
  TTCCAGAATA TTCTGAAGTT TTTTCAAACT GTGTTCTGTT CTTTTTGCTC ATGCTCTGAA
  TTCAGTGTTA CAATTTAGCA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss46866852	NES10820388	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs29643354					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46866852	NES10820388	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:28359305 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Rr574560	regulatory region 574560			1748 bp proximal
Tnik	TRAF2 and NCK interacting kinase			Intron
				Noncoding-Transcript-Variant