rs29640709 SNP Detail

Summary

• ID
  rs29640709
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:28220466 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GCAGGAGAGT AGTTTTAGCT
  ATTTCAATTG TGCAAACTCT TTTTCTTAGG TGAGCTACAA GGCAGAGAGG CGCTTAATCA
  TTCTATAAAT TTCAAACATT AGAAAGTTGT ATATATAATA GATATCATGA TAAACATATT
  TATTTTATGA TTTGGTTTCT GTCACTTACA ACATAGATCA TACTACTTAC ATATCTAAGA
  M
  TATCTCTCCT TCAAGAGATT GTGGTCTCTA CTAGGTCCAG GCTGTCCCAG CCACCACTGC
  CCAATGCAGA TTCCCCCCTT GACCAATCCT TGGCAAACAA TGGACCAATT AGGTCAGTAA
  TTTTACATCC CACCAAGCAG TAGTTTAGCC ACATGGGACA AGAAATGAAG ACAAGCCCTC
  ACCCGTTTAT CCCAAGATGG                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss46865757	NES10829980	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	A	A	A	A	C	A	A	C	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs29640709					SNP	A	A	A	A	A	A	A	A	A	A	C	A	A	C	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46865757	NES10829980	PERLEGEN	MM_PANEL	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:28220466 () rs orientation: forward

Symbol	Name	Function Class
Rr574541	regulatory region 574541	1418 bp distal
Rr574542	regulatory region 574542	396 bp distal
Rr574543	regulatory region 574543	546 bp distal
Tssr32864	transcription start site region 32864	1569 bp upstream