rs29639770 SNP Detail

Summary

• ID
  rs29639770
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:28220018 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTTTAAGAAA ATTAAGGCCC
  TCTGAAAACT AACTGCTGAC AAAATTACTT ACACACAGCA GAAAATGGGA ATCATCACAT
  TCTGCCCTCT AGGTGGCACT AGAACCCAAA CTTGAGTACC ACCGTGGCTT TCCAGCATCA
  TCTTTGAATG AGACCACAGT TCTCTCAATC AGGTCTTTAC AGGGACACTT GAGCTGCAGT
  S
  TCTTAACTCC AGAGCTCCCC CTGAGTAAAC CTCATGATGT CCATCAGCTC CTGTTGTCAT
  CTTCTAGGTA TGCCCAGTTT CTTTCTTCAA AATTTCTGAA TTGTATTGAC TAGACCTTTA
  ATTAAAGAGG TTCAGTTAAC TGCAGTCAGA ATAAATATAG TAAAACCAAT AAAAATTACT
  ATACTGTTCA GAAATGGATA                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss46865748	NES10829977	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	G	G	G	G	C	G	G	C	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs29639770					SNP	G	G	G	G	G	G	G	G	G	G	C	G	G	C	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46865748	NES10829977	PERLEGEN	MM_PANEL	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:28220018 () rs orientation: forward

Symbol	Name	Function Class
Rr574541	regulatory region 574541	970 bp distal
Rr574542	regulatory region 574542	within coordinates
Rr574543	regulatory region 574543	98 bp distal
Tssr32864	transcription start site region 32864	1121 bp upstream