rs29639720 SNP Detail

Summary

• ID
  rs29639720
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:95290192 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        GGGCGCTTTG TTTAAATTTG TGGTGTGATA GTGAGTCCAT
  TGACTTTAAA GAGGAAGAGA TGAGATCAAA GAACTTGATC GCAAAGGAAA ACGTTTTTGG
  M
  CGTTGAAAGT TACTTTTTAG TTTGGTCTGC GTTGGTTTGT ATACTTTTCT TTCGCTGATG
  AGGGAATAAA CTTCCATTGT AAAATGGGAC AGCTACAGG                       
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	C57BL/6J	MSM/Ms
ss46324173	mCV23074476	ABI	CRAMUS_MOUSE	f	SNP	C	A
ss136828250	ENSMUSSNP1942154	ENSEMBL	ENSEMBL_Sanger	f	SNP	C		A
SNP Consensus Information
SNP					Consensus Type	A/J	C57BL/6J	MSM/Ms
rs29639720					SNP	C	A	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:95290192 () rs orientation: forward

Symbol	Name	Function Class
Chst2	carbohydrate sulfotransferase 2	869 bp upstream
Gm35915	predicted gene, 35915	within coordinates
Gm37805	predicted gene, 37805	within coordinates
Rr684789	regulatory region 684789	1995 bp distal
Rr684790	regulatory region 684790	774 bp distal
Rr684791	regulatory region 684791	within coordinates
Tssr86547	transcription start site region 86547	700 bp downstream
Tssr90904	transcription start site region 90904	1020 bp upstream
Tssr90905	transcription start site region 90905	948 bp upstream
Tssr90906	transcription start site region 90906	927 bp upstream
Tssr90907	transcription start site region 90907	900 bp upstream
Tssr90908	transcription start site region 90908	863 bp upstream
Tssr90909	transcription start site region 90909	840 bp upstream
Tssr90910	transcription start site region 90910	806 bp upstream
Tssr90911	transcription start site region 90911	778 bp upstream
Tssr90912	transcription start site region 90912	360 bp upstream