rs29639015 SNP Detail

Summary

• ID
  rs29639015
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:28219293 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCTTAACCAC TATGCTAACA
  TCCTAGCCCC CTAAAATTAT ATTGGAACAA CATTACTGTG GTGGCACACA ACTGTAACCC
  CAGCACTTGG AAGGTAGAAT CAGAATTGTT AGGAGTTCAA AGCTATCCTC ACTACATTGC
  AAGTTCTAGG CCAGTCTGAC CAAAACAAAC AAACAGCAAT AGCAACAAAA CCATCAATCA
  Y
  AACATCAGAT AGATGCACAG AAAAGGATTA AATTTGTTAC ACAGTAATCT GTTGGGAGAT
  TAATTTCTTC ATTACCTAGA ACTTCTTACA TTTTTCAGAC ATGATGTAGC ACATCCTTAG
  TCCTAGCACA CAGGTGCAGG TAGATTTTTG TTCCAGAGCA GCCAGAACTA CACAGGGAGA
  CCCTGTTTTA AAAATAAATT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss46865733	NES10830075	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	T	T	T	T	C	T	T	C	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs29639015					SNP	T	T	T	T	T	T	T	T	T	T	C	T	T	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46865733	NES10830075	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:28219293 () rs orientation: forward

Symbol	Name	Function Class
Rr574541	regulatory region 574541	245 bp distal
Rr574542	regulatory region 574542	512 bp proximal
Rr574543	regulatory region 574543	606 bp proximal
Tssr32864	transcription start site region 32864	396 bp upstream