rs29638166 SNP Detail

Summary

• ID
  rs29638166
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:28218005 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GTCCC ATCAGCATGC ATCCTGAATG
  W
  CTCCACGGCA CTGCTGTGCT TCTAC                                      
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss45501685	mCV24741522	ABI	CRAMUS_MOUSE	f	SNP		T					A
ss46865724	NES10830155	PERLEGEN	MM_PANEL2	f	SNP	A	T	A	A	A	T		T	T	T	T		A	T	A	A		T
ss134711398	ENSMUSSNP944561	ENSEMBL	ENSEMBL_Sanger	f	SNP		T
ss320690442	CHEV_3_28062778	CHEVERUD	SCREENING_POP	f	SNP												T					A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs29638166					SNP	A	T	A	A	A	T	A	T	T	T	T	T	A	T	A	A	A	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46865724	NES10830155	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:28218005 () rs orientation: forward

Symbol	Name	Function Class
Rr574538	regulatory region 574538	1537 bp distal
Rr574539	regulatory region 574539	1471 bp distal
Rr574540	regulatory region 574540	1405 bp distal
Rr574541	regulatory region 574541	1022 bp proximal
Rr574542	regulatory region 574542	1800 bp proximal
Rr574543	regulatory region 574543	1894 bp proximal
Tssr32864	transcription start site region 32864	888 bp downstream