rs29636775 SNP Detail

Summary

• ID
  rs29636775
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:157681696 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCTTAAGTCC ATTCTCAGCC
  CTGTCACCTC AGGACCTGCC CCAAGCAACT GCAGTGGCAA TTTAGTCTGG TGGCACAGGT
  AGCTCACTGC TAATCATGTG CGGTCTTGGG CACATTCTAA ATTCTCTCTC TGAGCCTCAG
  CTGCCTGGTC TATAAAATAG TGGGACTTGA ATCACCCACT CTGGCTGTGT ATAAGGGCCA
  K
  ATGGAAGGAC AGTAGTAGTA AGACTGCTGC TGCTCTACAT CCGCGTGGTG GTCCCACCAA
  CTGTGGATTG AGAATGTGAG ACCCACCAAC TGTGGATTGA GAATGTGAGA CACACCAACT
  GTCAGTAGTG AGCATGTGCA GTCTCTTTTG AGTGTGTGTC AGTCATTATT TCTCAAGCAA
  TATAGCTTTC TCATACAGCT                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J
ss45348963	mCV22928359	ABI	CRAMUS_MOUSE	f	SNP	G	T	G	G
ss148107325	ENSMUSSNP1368019	ENSEMBL	ENSEMBL_Sanger	f	SNP		T		G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J
rs29636775					SNP	G	T	G	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:157681696 () rs orientation: forward

Symbol	Name	Function Class
Ctnnbl1	catenin, beta like 1	Intron
Rr374147	regulatory region 374147	within coordinates
Rr568595	regulatory region 568595	1238 bp distal
Rr568596	regulatory region 568596	800 bp proximal