rs29635318 SNP Detail

Summary

• ID
  rs29635318
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:108321506 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GCGTTATCGT TGATGTCTAG
  GACTTGCACT GTTACTAGGC CAGAGACATT GGAGAGTGGA GGACGGCCAC CGTCCTGAGC
  CCGGATCCGA AGCGTATACT CTTTGGTTGT CTCATAGTCG AGTGGGCTTA CCACATCCAG
  GGCTCCAGTC TGAGCATCCA GATAGAACTG GCCCCGAGCA TTGCCACTCA TGATGCTGTA
  R
  TGCACTAGGG CATTGCTGCC CTTGTCTCTA TCGGAGGCGG TGACTCGGAG AACTGGGGCT
  CCTGGGGTCA CATCCTCCCG CACCTGGACC ACATAACGCT TCTCGCTAAA CTGGGGGGCG
  TTGTCATTAT CATCCTCCAC CGACAGGAAA ACAATGGCTG TGGAACTCCG CGGGCCTGGG
  TCCCGGCCCT GGTCACTCGC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ	WSB/EiJ
ss46864726	NES10697093	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	A	G	G	G	G	A	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ	WSB/EiJ
rs29635318					SNP	G	G	G	G	G	G	A	G	G	G	G	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46864726	NES10697093	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:108321506 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Celsr2	cadherin, EGF LAG seven-pass G-type receptor 2			Coding-Synonymous
				Intron
Cpgi13701	CpG island 13701			716 bp proximal
Gm52630	predicted gene, 52630			1874 bp upstream
Rr407079	regulatory region 407079			1690 bp distal
Rr583231	regulatory region 583231			1253 bp proximal
Rr583232	regulatory region 583232			1867 bp proximal
Rr583233	regulatory region 583233			1909 bp proximal
Rr583234	regulatory region 583234			1938 bp proximal
Tssr31250	transcription start site region 31250			1789 bp upstream
Tssr35143	transcription start site region 35143			1821 bp downstream
Tssr35144	transcription start site region 35144			1862 bp downstream