rs29627717 SNP Detail

Summary

• ID
  rs29627717
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:120528686 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TTGTG CTTTCCCTTC AGGTCCTGAG
  Y
  TGTTCCTGCA CTCTACCCCC TGGAG                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	C57BL/6J	DBA/2J	LG/J	SM/J
ss45346282	mCV22574160	ABI	CRAMUS_MOUSE	f	SNP	C	T	C
ss147366574	ENSMUSSNP2222470	ENSEMBL	ENSEMBL_Sanger	f	SNP	C		C
ss320479460	CHEV_2_120523941	CHEVERUD	SCREENING_POP	f	SNP				T	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	C57BL/6J	DBA/2J	LG/J	SM/J
rs29627717					SNP	C	T	C	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:120528686 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Rr563728	regulatory region 563728			85 bp distal
Stard9	StAR related lipid transfer domain containing 9			Coding-Synonymous
				mRNA-UTR
				Noncoding-Transcript-Variant