rs29627446 SNP Detail

Summary

• ID
  rs29627446
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:153418740 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGAGAGCCCC TACCCTAAAA
  AAATAAAATA AATAAAAAAT AAAAAAAATA ATAAGATTTT TAAAAAGAAA GTGAAAAGAG
  CTACAAGTAC TAGGACTGTA TTTTAGTAGA AGAGTGCCTC CCTAGACGAT CTAGGTCTGA
  GCCCCAACAC TCCCACAAAA AACAAAACAA GCAAACTAAA AAACACCAAC ATCCGCCGGG
  Y
  GTGGTGGTGC ACGCCTTTAA TCCCAGCACT CGGGAGGCAG AGGCAGGCGG ATTTCTGAGT
  TCGAGGCCAG CCTGGTCTAC AAAGTGAGCT CCAGGACAGC CAGGGCTATA CAGAGAAACC
  CTGTTCGAAA AACCAAAACA ACAACAACAA CAACAACAAC AACAACAACA AAAAACAACA
  AAAAAACACC AACATCCAAA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J
ss45348288	mCV23861240	ABI	CRAMUS_MOUSE	f	SNP	T	C	C
ss147997099	ENSMUSSNP2565925	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	C	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J
rs29627446					SNP	T	C	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:153418740 () rs orientation: forward

Symbol	Name	Function Class
Rr567686	regulatory region 567686	327 bp distal
Rr567687	regulatory region 567687	240 bp proximal
Rr567688	regulatory region 567688	885 bp proximal