rs29627346 SNP Detail

Summary

• ID
  rs29627346
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:69301362 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        TTTTTTTTTC TGCTGTAGCA CTGCCAAGAG AAATTCAGAA
  AGAAAAAAGA AATATGAGGA GTAAGAAAAT GCCAGGACAG CAGAAAAAGA AGGGAGAAAA
  M
  GAGAAAAATG ACCAGAGTCA GTAAGAACCT GAAAGTACAG GGTGTGGGAG CAGAGAGACG
  GTAGAAAGGA AGGGGAACAG GAGTCAGGTA GAAGGGACC                       
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss45346569	mCV25166389	ABI	CRAMUS_MOUSE	f	SNP	A	A	A	C
ss146728460	ENSMUSSNP5057336	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	A		C
ss320331033	CHEV_2_69309075	CHEVERUD	SCREENING_POP	f	SNP					A	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs29627346					SNP	A	A	A	C	A	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:69301362 () rs orientation: forward

Symbol	Name	Function Class
Lrp2	low density lipoprotein receptor-related protein 2	Intron
Rr558418	regulatory region 558418	861 bp proximal
Rr558419	regulatory region 558419	1032 bp proximal