rs29626674 SNP Detail

Summary

• ID
  rs29626674
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:127154857 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        TAACACAGAA TTTGGTTAAA TTTGGAGGAA CCACCAAATT
  TTTTCCAAAG CAACTGTACC ATTCTACACT CATACCAGAA ATATTTTCCT GCCAACTCCA
  Y
  ACCATTCATT ACCTTTCCGT TGTTGTTTTT GTATGAAGTG GTGTCTCACT ATGGTTTTGG
  TTTGCACTTT CCTGATGCTT CATGACGGCA GTTGTCTGC                       
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J
ss45346472	mCV22839205	ABI	CRAMUS_MOUSE	f	SNP	C	C	C	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J
rs29626674					SNP	C	C	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:127154857 () rs orientation: forward

Symbol	Name	Function Class
Gm54150	predicted gene, 54150	within coordinates
Rr397284	regulatory region 397284	1903 bp downstream
Rr564492	regulatory region 564492	1759 bp distal
Rr564493	regulatory region 564493	1540 bp distal
Rr564494	regulatory region 564494	995 bp proximal
Rr564495	regulatory region 564495	1529 bp proximal
Tssr26110	transcription start site region 26110	1577 bp downstream
Tssr26111	transcription start site region 26111	1620 bp downstream