rs29626553 SNP Detail

Summary

• ID
  rs29626553
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:157891434 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GTGGCCGATC AACTTTCAGG
  GCAATCTGAC TATTGCCGAC AGAGCCAGCT GTCCTTAGGT CATTGTGCTC TGCCACCTGT
  CAGCACCCTA TGCTTTCTCG TGGTTTTTTT TGTTTGTTTG TTTTGGTTTT TTGTTTTTTT
  TTTTTTTTGA GACAGGGTTT CTCTTTGTAG CCCTGGCTGT CCTGGAACTC ACTCTGTAGA
  M
  CAGGCTGGCC TCAAACTCAG AAATCCGCCT GCCTCTGCCT CCCAAGTGCT GGTTTGTAAA
  ACCCTTTTGA TAGACACAGG ATATGCTTTT CTTGTCTTTA ACTCTTAATG AGTTAATTTA
  TTTGACATTT TAATATTGGC AGGGATTTTT ATTTTGTAAA ACAAACTCTA GAAAGAATTT
  AATCAGCCAG CACAGCTGTT                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J
ss45347568	mCV25108992	ABI	CRAMUS_MOUSE	f	SNP	C	A	A
ss148108709	ENSMUSSNP1368302	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	A	A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J
rs29626553					SNP	C	A	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:157891434 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Rprd1b	regulation of nuclear pre-mRNA domain containing 1B			Intron
				Noncoding-Transcript-Variant
Rr568629	regulatory region 568629			1303 bp distal
Rr568630	regulatory region 568630			1413 bp distal
Rr568631	regulatory region 568631			1100 bp distal