rs29626381 SNP Detail

Summary

• ID
  rs29626381
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:148715997 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        TTTAGCAGCT CCTGCAGCTA GCTCCTCTGT CAGAGTCTAA
  GTCTAAGGTA GTCTGTCCAT CTACTCAGTG GGTGGAGGGT GATTAGAGCT ATCTTGGGGG
  S
  TAATTAGCAA AACCCCTGAG GGATATCCCG AGGATATTCC AGGGCCACAA GAAGAGGGAA
  GCAAGGCTTC TTAGAACAAC TAGACAGCAC CTTCTGAGA                       
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	LG/J	SM/J
ss45346274	mCV22550520	ABI	CRAMUS_MOUSE	f	SNP	G	G	C	G
ss147934883	ENSMUSSNP5163842	ENSEMBL	ENSEMBL_Sanger	f	SNP		G	C
ss320557216	CHEV_2_148699813	CHEVERUD	SCREENING_POP	f	SNP					G	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	LG/J	SM/J
rs29626381					SNP	G	G	C	G	G	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:148715997 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Cst3	cystatin C			Intron
				Noncoding-Transcript-Variant
Rr374041	regulatory region 374041			55 bp upstream
Rr566976	regulatory region 566976			1455 bp proximal
Rr566977	regulatory region 566977			1489 bp proximal
Tssr20681	transcription start site region 20681			1186 bp downstream
Tssr20682	transcription start site region 20682			1071 bp upstream
Tssr20683	transcription start site region 20683			1147 bp upstream
Tssr26685	transcription start site region 26685			1171 bp upstream
Tssr26686	transcription start site region 26686			1138 bp upstream
Tssr26687	transcription start site region 26687			1007 bp upstream
Tssr26688	transcription start site region 26688			1344 bp downstream
Tssr26689	transcription start site region 26689			1375 bp downstream
Tssr26690	transcription start site region 26690			1527 bp downstream
Tssr26691	transcription start site region 26691			1546 bp downstream