rs29625890 SNP Detail

Summary

• ID
  rs29625890
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:103639726 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GAACC TTCACTTTCC TTTTCCTTTG
  Y
  AGCACGCAGA AACAAGCCCA TGTTT                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J
ss45345868	mCV25169073	ABI	CRAMUS_MOUSE	f	SNP	C	C	T	C
ss147139052	ENSMUSSNP1513296	ENSEMBL	ENSEMBL_Sanger	f	SNP		C	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J
rs29625890					SNP	C	C	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:103639726 () rs orientation: forward

Symbol	Name	Function Class
4930547E08Rik	RIKEN cDNA 4930547E08 gene	within coordinates
Gm13878	predicted gene 13878	1505 bp downstream
Gm75184	predicted gene, 75184	within coordinates
Rr561936	regulatory region 561936	1321 bp distal
Rr561937	regulatory region 561937	583 bp distal
Rr561938	regulatory region 561938	1039 bp proximal
Rr561939	regulatory region 561939	1249 bp proximal