rs29624849 SNP Detail

Summary

• ID
  rs29624849
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:127672959 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                                                   
  ACTGCAATGG TTTTCTCATA ATTTAGTAGA GATTTTAGCA ATTTATTTTT AAGTCAACGA
  TTCTCACTTT TTCACTTTGG ATTCATTTTG GATTCTTTTT AGCATGTTTG AAATGTCAGC
  ACTACTTCTG TGTTTAGAAG TTCTTATTTA GCAAAATAAG AAATACAAAT ATTTGTCCAA
  GATAAACAAA CATTGAATAG CCCCACACCA ACCACACCTC CTGGGAAAAT GGCTTAAACA
  TCAAATCATT AAAATAAATT AGTCTTTAAA AATCAAAATA CCTAGCTTCT ATTTTAGAAC
  R
  GGGAGGGGAA ATCCTTAGTC GATCTGATCA AAAATTAAAT TGCTTAACGC CAACAGATTT
  TGGATATCTT ACTCTTAGAA TACCTAAAGA ACTGATGAAA ATAAAATTGT ATTTCTTGTA
  ACATCCGATT TAACAGTTTT AAATGGCTTA ACATCACAGG CTGAGTAAGT CACCTAAGCG
  CCCGCCCCCA GACCCCAAAA CAAAAACAAA TAACCAATCA GTGCCTGCAG GAAGCCTCAA
  ATGACTTAAT AGCAAGCATT CCCCCCCCCC CATAAAGTTC AGCTTTAATT TTTTTCTTAC
                                                                   
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss45346949	mCV22597107	ABI	CRAMUS_MOUSE	f	SNP	G	G	A	G	G
ss147542372	ENSMUSSNP4924967	ENSEMBL	ENSEMBL_Sanger	f	SNP			A
ss320500796	CHEV_2_127656775	CHEVERUD	SCREENING_POP	f	SNP						G	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs29624849					SNP	G	G	A	G	G	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:127672959 () rs orientation: forward

Symbol	Name	Function Class
Bub1	BUB1, mitotic checkpoint serine/threonine kinase	Intron
Cpgi12232	CpG island 12232	391 bp proximal
Rr397289	regulatory region 397289	736 bp upstream
Rr564601	regulatory region 564601	145 bp proximal
Rr564602	regulatory region 564602	810 bp proximal
Rr564603	regulatory region 564603	1931 bp proximal
Tssr26147	transcription start site region 26147	778 bp downstream