rs29624026 SNP Detail

Summary

• ID
  rs29624026
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:153474404 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CCTAA TCTATTCAAA CCGGGGGCCG
  Y
  TTGGAATCCC CTCATTCCCT CCTCT                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
ss45347717	mCV23862315	ABI	CRAMUS_MOUSE	f	SNP	C	T	T
ss147999485	ENSMUSSNP6363448	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	T	T
ss320564308	CHEV_2_153458220	CHEVERUD	SCREENING_POP	f	SNP				C	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
rs29624026					SNP	C	T	T	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:153474404 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Commd7	COMM domain containing 7			Intron
				Noncoding-Transcript-Variant
Cpgi12491	CpG island 12491			within coordinates
Rr567710	regulatory region 567710			246 bp proximal
Tssr26915	transcription start site region 26915			195 bp downstream
Tssr26916	transcription start site region 26916			291 bp downstream