rs29623871 SNP Detail

Summary

• ID
  rs29623871
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:172197681 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GAGGTGAAGC AACTAAAGCA
  CCGTATAAGC CAGCAAGGCG CACAGAGCTG CTCCTGCCTA TGTGATCTTT AAGTAGACCA
  GGAGCCAGGA AACCACTTTA AGATGTAAGC CATTGTGTGT CTCTAGTTTC TTAAGCAGAC
  CAAGTGAATG GCTTACAGTC TGAAACAAAT AAAAGCCTTT GTAAAAGTCT GCGGTCTGCC
  R
  TCTGGTAAGC CATCACTGCC GCCAGGAAGA GCGCCATGGG AATGTGGCAC TCCTCTGCAT
  GTAGGATAGT CACAAACTAG CCGGAGCTAG AGGAGGCAGT GTCCCGTGCT CAGTTTGCCT
  CCCTGGATTG CATCTCACTT AACTGCAGCT TGGGTGGACA GTACTAGCAA TATTGCTACT
  TCAACAAAGC CTTAGCACAG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss45348196	mCV23771681	ABI	CRAMUS_MOUSE	f	SNP	A	A	A	G	G
ss148314488	ENSMUSSNP3504789	ENSEMBL	ENSEMBL_Sanger	f	SNP			A		G
ss320618310	CHEV_2_172181261	CHEVERUD	SCREENING_POP	f	SNP						A	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs29623871					SNP	A	A	A	G	G	A	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:172197681 () rs orientation: forward

Symbol	Name	Function Class
Aurka	aurora kinase A	429 bp downstream
Fam210b	family with sequence similarity 210, member B	12 bp downstream
Rr571655	regulatory region 571655	1979 bp distal
Rr571656	regulatory region 571656	342 bp distal
Rr571657	regulatory region 571657	within coordinates