rs29623643 SNP Detail

Summary

• ID
  rs29623643
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:109718674 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GCCCAGCGGT TCTGATCATG
  GGATCACCAA ACACAAAGTA GGGCTACCCG CATTAACTTC TGTTTTTTTG TTGTTGTTTT
  TGTTTTTTTC TTTGTTTGTT AGTTTGTTTT TTACCTGTGG CTTTGTACTG AGACTACTAC
  TGTCTTCTTT CTCATGCTTC CATCTTGCAG GCCACAGATC ATGATATATC TTATCTTTCA
  Y
  GATCACTTGA AGCAATCTTT ACAGTAAGTC TGTGTTCCAT GATTGTACAC ACATGTGAGT
  GTACACATTC TGTTAGTTAT GTTTCTCTAG AGACAATAAT GAAACAAGTA TTCTAGGGTC
  GTCTTAATTG GTTCTGTTTT CTGAGTGCTG AGACAACTGC TCTGTCACTA AGCTACATCG
  GCAATATAAC TTCCTAATTC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J
ss45347900	mCV23788752	ABI	CRAMUS_MOUSE	f	SNP	C	T	T	T
ss147205615	ENSMUSSNP5724050	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J
rs29623643					SNP	C	T	T	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:109718674 () rs orientation: forward

Symbol	Name	Function Class
Gm54141	predicted gene, 54141	within coordinates
Rr562499	regulatory region 562499	1780 bp proximal
Rr562500	regulatory region 562500	1927 bp proximal