rs29622747 SNP Detail

Summary

• ID
  rs29622747
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr18:69763742 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGTGGCTCCA GCAGGTTCTG
  CGTATTACAA CAGTTACTTG AACTTCCAGT TTTTAATTGT ATGAATGTTC AGACTCCTGT
  TTTCCTTGTG CATGGAGGCT GGCACCTGGC CAAGGGGTAG AATGTGTCCC TGAGTTGTGC
  TATGCCTCGG ATTTCATCCC CAGGGCCACC GTCAGTTAGC TCTAAGCAAA TAAATAGAAC
  K
  TGGGGAGCTG AAGCAAAGAA AGCCTCGTCA ACTTCTCAGA AACAGATCTG TGCAATATTA
  GTTTATAGAA ACAAAAATAT AGGTCATTTG CCGTAAAATG ACACGATGTG AGAAAATGCC
  CTCCCTAAGG GGAAGAGAGT GATGTCATGC CTTTGCTGTA AGCTGTTGTT TGTGTTTTAG
  AAGATACATA GACACTATCT                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J
ss39598033	mCV22676818	ABI	CRAMUS_MOUSE	f	SNP	T	T	G	G
ss147387957	ENSMUSSNP1996121	ENSEMBL	ENSEMBL_Sanger	f	SNP		T	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J
rs29622747					SNP	T	T	G	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr18:69763742 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Rr540232	regulatory region 540232			within coordinates
Rr540233	regulatory region 540233			1004 bp proximal
Rr540234	regulatory region 540234			1382 bp proximal
Tcf4	transcription factor 4			Intron
				Noncoding-Transcript-Variant