rs29622578 SNP Detail

Summary

• ID
  rs29622578
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:118182792 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CACCA CTGAAGAGGT CCAGCTGTCC
  Y
  TCAAAAAGTT TATGTTCAAA TCCTA                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss45346127	mCV24648019	ABI	CRAMUS_MOUSE	f	SNP	T	T	T	C	T
ss147296855	ENSMUSSNP1504707	ENSEMBL	ENSEMBL_Sanger	f	SNP			T
ss320468884	CHEV_2_118178047	CHEVERUD	SCREENING_POP	f	SNP						C	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs29622578					SNP	T	T	T	C	T	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:118182792 () rs orientation: forward

Symbol	Name	Function Class
Gm56462	predicted gene, 56462	980 bp downstream
Gpr176	G protein-coupled receptor 176	Intron
Rr563221	regulatory region 563221	1851 bp proximal