rs29622283 SNP Detail

Summary

• ID
  rs29622283
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:79959711 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GTTCCGTGCA CAGAAGCACA
  TCAGAATTTC TACAGTTTAC GAGCTCAATT ATGCACGAAA GAAACGTGAA TGACTTTCGC
  GCTCTACAAG AAGCTGAATT CCTCTCTAGC AGCTGAAGCA GGGCAGGATG TAATAAGAAA
  CCAGATGGTA GGAAGCAGTA CCAGCAGCAC CACCCTGGGA AGAAAGTGCC TGTTTAAATA
  Y
  CAAGGCTTTT GTCTCTTAAT TGATCTGGAA GCGGCACTTA AAAATACAGC ACACTTCCTG
  AATAAATGCA GCCAATATTA ATGACAAACA CGGAGAAGAG TCACACATAG AGCCGTACAG
  GAGACAGACC CCAGAGCTCC ACAGGTTGTT ATTGAGAGAG TATGTCCATC AAGTGATGCT
  GGAATCGTGC TTATTCATCT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	MSM/Ms
ss45346329	mCV25097172	ABI	CRAMUS_MOUSE	f	SNP	T	C	C	C
ss146789724	ENSMUSSNP107829	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	C		C	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	MSM/Ms
rs29622283					SNP	T	C	C	C	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:79959711 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Cpgi11847	CpG island 11847			119 bp distal
Pde1a	phosphodiesterase 1A, calmodulin-dependent			Intron
				mRNA-UTR
				Noncoding-Transcript-Variant
Rr560061	regulatory region 560061			within coordinates
Rr560062	regulatory region 560062			81 bp proximal
Tssr24917	transcription start site region 24917			371 bp upstream
Tssr24918	transcription start site region 24918			344 bp upstream
Tssr24919	transcription start site region 24919			229 bp upstream
Tssr24920	transcription start site region 24920			194 bp upstream
Tssr24921	transcription start site region 24921			175 bp upstream
Tssr24922	transcription start site region 24922			124 bp upstream
Tssr24923	transcription start site region 24923			89 bp upstream
Tssr24924	transcription start site region 24924			63 bp upstream
Tssr24925	transcription start site region 24925			168 bp downstream